Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin | BJD13_RS02705 | Not Available | Negative | 236184 - 237041 | 31128.9 |
| duf998 domain-containing protein | BJD13_RS02710 | Not Available | Positive | 237248 - 237865 | 21318.8 |
| leucine--trna ligase | BJD13_RS02715 | Not Available | Positive | 237933 - 240575 | 98546.9 |
| lps assembly lipoprotein lpte | BJD13_RS02720 | Not Available | Positive | 241130 - 241774 | 22663.0 |
| dna polymerase iii subunit delta | BJD13_RS02725 | Not Available | Positive | 241797 - 242825 | 37272.8 |
| nicotinate-nucleotide adenylyltransferase | BJD13_RS02730 | Not Available | Positive | 242822 - 243691 | 30789.3 |
| ribosome silencing factor | BJD13_RS02735 | Not Available | Positive | 243748 - 244161 | 15258.3 |
| alkaline phosphatase phox | BJD13_RS02740 | Not Available | Negative | 244319 - 245854 | 54547.0 |
| 23s rrna (pseudouridine(1915)-n(3))-methyltransferase rlmh | BJD13_RS02745 | Not Available | Positive | 245976 - 246446 | 17340.0 |
| energy transducer tonb | BJD13_RS02750 | Not Available | Negative | 246525 - 247130 | 20884.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
