Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tigr00266 family protein | BJD13_RS16090 | Not Available | Positive | 3203539 - 3204546 | 35169.0 |
| amidohydrolase | BJD13_RS16095 | Not Available | Negative | 3204575 - 3205948 | 48699.0 |
| patatin-like phospholipase family protein | BJD13_RS16100 | Not Available | Positive | 3206123 - 3207166 | 36110.7 |
| tonb-dependent siderophore receptor | BJD13_RS16105 | Not Available | Negative | 3207572 - 3209770 | 80562.3 |
| lrp/asnc family transcriptional regulator | BJD13_RS16110 | Not Available | Negative | 3210063 - 3210545 | 17535.1 |
| phenylalanine 4-monooxygenase | BJD13_RS16115 | Not Available | Positive | 3210673 - 3211563 | 33452.6 |
| duf4375 domain-containing protein | BJD13_RS16120 | Not Available | Positive | 3211701 - 3212345 | 24162.8 |
| gdsl-type esterase/lipase family protein | BJD13_RS16125 | Not Available | Negative | 3212572 - 3213684 | 40332.0 |
| rpib/laca/lacb family sugar-phosphate isomerase | BJD13_RS16130 | Not Available | Negative | 3213907 - 3214569 | 23618.1 |
| 2-dehydro-3-deoxy-d-gluconate 5-dehydrogenase kdud | BJD13_RS16135 | Not Available | Negative | 3214803 - 3215558 | 26161.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
