Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| indolepyruvate ferredoxin oxidoreductase family protein | BJD13_RS16040 | Not Available | Positive | 3190667 - 3194410 | 135487.0 |
| duf3253 domain-containing protein | BJD13_RS16045 | Not Available | Negative | 3194508 - 3194777 | 9622.63 |
| l-histidine n(alpha)-methyltransferase | BJD13_RS16050 | Not Available | Negative | 3194793 - 3195779 | 35859.8 |
| ergothioneine biosynthesis protein egtb | BJD13_RS16055 | Not Available | Negative | 3195776 - 3197059 | 48011.2 |
| aminotransferase class v-fold plp-dependent enzyme | BJD13_RS16060 | Not Available | Positive | 3197131 - 3198312 | 41484.9 |
| glycine betaine abc transporter substrate-binding protein | BJD13_RS16065 | Not Available | Negative | 3198504 - 3199976 | 52967.7 |
| atp-binding cassette domain-containing protein | BJD13_RS16070 | Not Available | Negative | 3199973 - 3200710 | 26730.6 |
| ef-hand domain-containing protein | BJD13_RS16075 | Not Available | Negative | 3200759 - 3201154 | 14583.4 |
| acyl-coa desaturase | BJD13_RS16080 | Not Available | Negative | 3201144 - 3202376 | 46238.7 |
| abc transporter atp-binding protein | BJD13_RS16085 | Not Available | Positive | 3202497 - 3203342 | 30466.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
