Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nitrogen regulation protein nr(i) | BJD13_RS15925 | Not Available | Negative | 3168613 - 3170040 | 51685.9 |
| two-component system sensor histidine kinase ntrb | BJD13_RS15930 | Not Available | Negative | 3170033 - 3171088 | 38594.1 |
| ammonium transporter | BJD13_RS15935 | Not Available | Negative | 3171353 - 3172795 | 49064.5 |
| p-ii family nitrogen regulator | BJD13_RS15940 | Not Available | Negative | 3172818 - 3173156 | 12041.7 |
| type i glutamate--ammonia ligase | BJD13_RS15945 | Not Available | Negative | 3173430 - 3174839 | 51848.7 |
| undecaprenyl-diphosphate phosphatase | BJD13_RS15955 | Not Available | Positive | 3175061 - 3175858 | 28525.6 |
| meta domain-containing protein | BJD13_RS15960 | Not Available | Positive | 3176099 - 3176914 | 28368.5 |
| zinc-dependent alcohol dehydrogenase family protein | BJD13_RS15965 | Not Available | Negative | 3176973 - 3177983 | 35076.5 |
| ybhb/ybcl family raf kinase inhibitor-like protein | BJD13_RS15970 | Not Available | Negative | 3178063 - 3178674 | 21933.8 |
| tetratricopeptide repeat protein | BJD13_RS15975 | Not Available | Negative | 3178865 - 3180937 | 75407.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
