Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yiid c-terminal domain-containing protein | BJD13_RS15875 | Not Available | Negative | 3158314 - 3158784 | 16569.0 |
| glycosyltransferase family 25 protein | BJD13_RS15880 | Not Available | Negative | 3159109 - 3159924 | 29919.7 |
| uroporphyrinogen-iii synthase | BJD13_RS15885 | Not Available | Positive | 3160128 - 3160907 | 27258.4 |
| uroporphyrinogen-iii c-methyltransferase | BJD13_RS15890 | Not Available | Positive | 3161011 - 3161988 | 35995.0 |
| heme biosynthesis protein hemy | BJD13_RS15895 | Not Available | Positive | 3161985 - 3163250 | 45895.7 |
| acetyl-coa c-acetyltransferase | BJD13_RS15900 | Not Available | Negative | 3163473 - 3164768 | 45564.8 |
| hypothetical protein | BJD13_RS15905 | Not Available | Positive | 3164857 - 3165741 | 32096.3 |
| tonb family protein | BJD13_RS15910 | Not Available | Positive | 3165918 - 3166904 | 36889.4 |
| superoxide dismutase family protein | BJD13_RS15915 | Not Available | Negative | 3166947 - 3167594 | 21743.0 |
| superoxide dismutase family protein | BJD13_RS15920 | Not Available | Negative | 3167643 - 3168245 | 19996.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
