Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS15825 | Not Available | Negative | 3148754 - 3149506 | 25390.6 |
| sigma-54-dependent transcriptional regulator | BJD13_RS15830 | Not Available | Negative | 3149697 - 3151043 | 48103.8 |
| sensor histidine kinase | BJD13_RS15835 | Not Available | Negative | 3151028 - 3152470 | 52000.9 |
| ubiquinone-dependent pyruvate dehydrogenase | BJD13_RS15840 | Not Available | Negative | 3152520 - 3154229 | 61273.1 |
| diffusible signal factor-reguated ax21 faimly virulence factor | BJD13_RS15845 | Not Available | Positive | 3154624 - 3155220 | 21907.1 |
| Ncrna_class:other | Not Available | Not Available | Positive | 3155554 - 3155627 | Not Available |
| nad(p)h-dependent glycerol-3-phosphate dehydrogenase | BJD13_RS15855 | Not Available | Negative | 3155690 - 3156715 | 35860.3 |
| protein-export chaperone secb | BJD13_RS15860 | Not Available | Negative | 3156731 - 3157243 | 18073.3 |
| rhodanese-like domain-containing protein | BJD13_RS15865 | Not Available | Negative | 3157353 - 3157787 | 15380.9 |
| hypothetical protein | BJD13_RS15870 | Not Available | Negative | 3157863 - 3158285 | 15902.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
