Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| olefin beta-lactone synthetase | BJD13_RS15775 | Not Available | Negative | 3138778 - 3140439 | 58793.7 |
| ykgj family cysteine cluster protein | BJD13_RS15780 | Not Available | Positive | 3140759 - 3141142 | 13859.4 |
| alpha/beta fold hydrolase | BJD13_RS15785 | Not Available | Negative | 3141298 - 3142200 | 34076.8 |
| protein adenylyltransferase fic | BJD13_RS15790 | Not Available | Negative | 3142349 - 3143488 | 42883.6 |
| 3-oxoacyl-acp synthase iii | BJD13_RS15795 | Not Available | Negative | 3143572 - 3144588 | 36558.2 |
| duf4156 domain-containing protein | BJD13_RS15800 | Not Available | Negative | 3144690 - 3145010 | 11332.6 |
| hypothetical protein | BJD13_RS15805 | Not Available | Positive | 3145397 - 3145858 | 15562.7 |
| trna (cytidine(34)-2'-o)-methyltransferase | BJD13_RS15810 | Not Available | Positive | 3145885 - 3146361 | 17554.1 |
| mfs transporter | BJD13_RS15815 | Not Available | Negative | 3146712 - 3147941 | 41731.1 |
| hypothetical protein | BJD13_RS15820 | Not Available | Negative | 3148034 - 3148651 | 21737.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
