Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf2867 domain-containing protein | BJD13_RS02655 | Not Available | Negative | 225573 - 225836 | 9880.03 |
| lysr substrate-binding domain-containing protein | BJD13_RS02660 | Not Available | Negative | 225893 - 226885 | 36461.0 |
| dmt family transporter | BJD13_RS02665 | Not Available | Positive | 227056 - 227943 | 31245.3 |
| peptidylprolyl isomerase | BJD13_RS02670 | Not Available | Negative | 227996 - 228967 | 35387.1 |
| duf378 domain-containing protein | BJD13_RS02675 | Not Available | Negative | 229038 - 229280 | 8729.79 |
| hypothetical protein | BJD13_RS24525 | Not Available | Positive | 229374 - 229577 | 7052.36 |
| type iii secretion system effector xopn | BJD13_RS02680 | Not Available | Negative | 229724 - 231925 | 77847.2 |
| hpa3 family type iii secretion system protein | BJD13_RS02685 | Not Available | Positive | 232617 - 233063 | 15813.3 |
| type iii secretion system effector xopf1 | BJD13_RS25320 | Not Available | Positive | 233060 - 235063 | 70467.7 |
| duf4442 domain-containing protein | BJD13_RS02700 | Not Available | Negative | 235467 - 235916 | 17304.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
