Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| malate synthase a | BJD13_RS15675 | Not Available | Negative | 3119057 - 3120673 | 59209.3 |
| lysr family transcriptional regulator | BJD13_RS15680 | Not Available | Positive | 3120792 - 3121748 | 35450.8 |
| cation:proton antiporter | BJD13_RS15685 | Not Available | Positive | 3122102 - 3123364 | 43697.1 |
| nfed family protein | BJD13_RS15690 | Not Available | Positive | 3123509 - 3124237 | 26240.4 |
| voc family protein | BJD13_RS15695 | Not Available | Positive | 3124306 - 3124653 | 12769.8 |
| tetr/acrr family transcriptional regulator | BJD13_RS15700 | Not Available | Negative | 3124825 - 3125457 | 23002.6 |
| hypothetical protein | BJD13_RS15705 | Not Available | Negative | 3125467 - 3125688 | 7787.16 |
| mbl fold metallo-hydrolase | BJD13_RS15710 | Not Available | Positive | 3125687 - 3126742 | 38264.2 |
| peptidyl-dipeptidase dcp | BJD13_RS15715 | Not Available | Negative | 3127139 - 3129328 | 80717.7 |
| isoaspartyl peptidase/l-asparaginase family protein | BJD13_RS15720 | Not Available | Negative | 3129437 - 3130453 | 35485.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
