Xanthomonas perforans strain LH3

Rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas perforans strain LH3 is a rod-shaped bacterium characterized by the presence of flagella, which facilitates its mobility. This strain is known to possess a single replicon, indicating a streamlined genomic structure that can impact its adaptability and replication efficiency. Xanthomonas perforans is particularly significant due to its pathogenicity in key agricultural crops. It is a known causative agent of bacterial spot disease in tomato plants (Solanum lycopersicum), which can lead to substantial yield losses. Additionally, this strain has been associated with Arabidopsis thaliana, a model organism in plant biology, suggesting its utility in studies related to plant-microbe interactions. The accession number for this strain is NZ_CP018475.1, which provides a reference point for researchers interested in genomic studies or comparative analyses within the Xanthomonas genus. From an ecological perspective, the presence of Xanthomonas perforans in important crops like tomato highlights the potential impact of bacterial pathogens on agricultural ecosystems. The interactions between this bacterium and its host plants can influence plant health, agricultural practices, and food security. Understanding the biology and behavior of Xanthomonas perforans is crucial for developing effective management strategies to mitigate the effects of bacterial spot disease in tomato and potentially other hosts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas perforans
Strainstrain LH3

Profile

Physiology
Gram staining propertiesNot Available
ShapeRod
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Image of Xanthomonas perforans strain LH3
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Solanum lycopersicum, Arabidopsis thaliana
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas perforans strain LH3 chromosome, complete genome.

Gene Summary

Adenine Count

872906 bp

Thymine Count

873101 bp

Guanine Count

1612744 bp

Cytosine Count

1611142 bp

Genome Length

4969893 bp

Protein-coding Genes

4115 genes

Non-Coding Genes

146 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
tetr/acrr family transcriptional regulatorBJD13_RS15625Not AvailableNegative3103864 - 310448421892.3
isovaleryl-coa dehydrogenaseBJD13_RS15630Not AvailablePositive3104613 - 310577641457.9
carboxyl transferase domain-containing proteinBJD13_RS15635Not AvailablePositive3105787 - 310739757365.8
acetyl/propionyl/methylcrotonyl-coa carboxylase subunit alphaBJD13_RS15640Not AvailablePositive3107638 - 310966572311.7
alpha/beta hydrolase family proteinBJD13_RS15645Not AvailablePositive3109765 - 311184975516.0
putative peptide maturation dehydrogenaseBJD13_RS15650Not AvailableNegative3112079 - 311323942378.7
nhlp-related ripp peptideBJD13_RS15655Not AvailablePositive3113401 - 311370010627.6
putative peptide modification system cyclaseBJD13_RS15660Not AvailableNegative3113728 - 311624191646.7
sensor domain-containing diguanylate cyclaseBJD13_RS15665Not AvailableNegative3116245 - 311730338538.8
isocitrate lyaseBJD13_RS15670Not AvailableNegative3117603 - 311889846829.3

Displaying genes 2771 – 2780 of 4261 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
Bacterial spot of tomatoCausesPMC6946519
Bacterial spot of tomatoCausesPMC12211302
Pith necrosisCausesPMC12847849
Bacterial spotCausesPMC8597037
Bacterial spot of tomatoCausesPMC8597037

Displaying health effects 1 – 5 of 5 in total