Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tetr/acrr family transcriptional regulator | BJD13_RS15625 | Not Available | Negative | 3103864 - 3104484 | 21892.3 |
| isovaleryl-coa dehydrogenase | BJD13_RS15630 | Not Available | Positive | 3104613 - 3105776 | 41457.9 |
| carboxyl transferase domain-containing protein | BJD13_RS15635 | Not Available | Positive | 3105787 - 3107397 | 57365.8 |
| acetyl/propionyl/methylcrotonyl-coa carboxylase subunit alpha | BJD13_RS15640 | Not Available | Positive | 3107638 - 3109665 | 72311.7 |
| alpha/beta hydrolase family protein | BJD13_RS15645 | Not Available | Positive | 3109765 - 3111849 | 75516.0 |
| putative peptide maturation dehydrogenase | BJD13_RS15650 | Not Available | Negative | 3112079 - 3113239 | 42378.7 |
| nhlp-related ripp peptide | BJD13_RS15655 | Not Available | Positive | 3113401 - 3113700 | 10627.6 |
| putative peptide modification system cyclase | BJD13_RS15660 | Not Available | Negative | 3113728 - 3116241 | 91646.7 |
| sensor domain-containing diguanylate cyclase | BJD13_RS15665 | Not Available | Negative | 3116245 - 3117303 | 38538.8 |
| isocitrate lyase | BJD13_RS15670 | Not Available | Negative | 3117603 - 3118898 | 46829.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
