Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| merc family mercury resistance protein | BJD13_RS15575 | Not Available | Positive | 3095924 - 3096310 | 13464.0 |
| shoct domain-containing protein | BJD13_RS24725 | Not Available | Negative | 3096401 - 3096646 | 8444.92 |
| exem/nuch family extracellular endonuclease | BJD13_RS15585 | Not Available | Negative | 3096900 - 3098618 | 60424.4 |
| c-type cytochrome | BJD13_RS15590 | Not Available | Negative | 3098895 - 3099413 | 17954.6 |
| duf4198 domain-containing protein | BJD13_RS15595 | Not Available | Positive | 3099696 - 3100340 | 23259.8 |
| duf3649 domain-containing protein | BJD13_RS15600 | Not Available | Positive | 3100516 - 3100827 | 10870.7 |
| pepsy-associated tm helix domain-containing protein | BJD13_RS15605 | Not Available | Positive | 3100824 - 3102443 | 58961.9 |
| duf3325 domain-containing protein | BJD13_RS15610 | Not Available | Positive | 3102440 - 3102775 | 11745.0 |
| res family nad+ phosphorylase | BJD13_RS15615 | Not Available | Negative | 3102882 - 3103406 | 19067.8 |
| hypothetical protein | BJD13_RS15620 | Not Available | Negative | 3103403 - 3103777 | 13586.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
