Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| fad-dependent urate hydroxylase hpyo | BJD13_RS15475 | Not Available | Positive | 3074844 - 3076265 | 52111.5 |
| hydroxyisourate hydrolase | BJD13_RS15480 | Not Available | Positive | 3076235 - 3076594 | 12731.1 |
| duf1456 family protein | BJD13_RS15485 | Not Available | Positive | 3076762 - 3077235 | 17856.7 |
| hypothetical protein | BJD13_RS15490 | Not Available | Negative | 3077412 - 3077696 | 10903.6 |
| atp-dependent helicase hrpb | BJD13_RS15495 | Not Available | Positive | 3077928 - 3080429 | 91240.3 |
| hypothetical protein | BJD13_RS15500 | Not Available | Positive | 3080895 - 3081326 | 15032.8 |
| pseudouridine synthase | BJD13_RS15505 | Not Available | Negative | 3081657 - 3082229 | 21451.8 |
| class i sam-dependent methyltransferase | BJD13_RS15510 | Not Available | Negative | 3082323 - 3083177 | 30689.6 |
| aldo/keto reductase | BJD13_RS15515 | Not Available | Positive | 3083412 - 3084383 | 34733.8 |
| nadp-dependent oxidoreductase | BJD13_RS15520 | Not Available | Positive | 3084518 - 3085546 | 37292.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
