Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gamma-glutamyltransferase family protein | BJD13_RS15425 | Not Available | Positive | 3065277 - 3066857 | 55501.9 |
| gas vesicle accessory protein gvpu | BJD13_RS15430 | Not Available | Positive | 3067081 - 3067539 | 16533.1 |
| Ncrna_class:other | Not Available | Not Available | Positive | 3067544 - 3067620 | Not Available |
| alpha/beta fold hydrolase | BJD13_RS15440 | Not Available | Negative | 3067861 - 3068748 | 32974.1 |
| lysr family transcriptional regulator | BJD13_RS15445 | Not Available | Positive | 3069115 - 3070047 | 33379.3 |
| allantoate amidohydrolase | BJD13_RS15450 | Not Available | Positive | 3070614 - 3071834 | 42203.9 |
| pyridoxal-phosphate-dependent aminotransferase family protein | BJD13_RS15455 | Not Available | Positive | 3071824 - 3073080 | 44579.9 |
| allantoinase puue | BJD13_RS15460 | Not Available | Positive | 3073077 - 3073967 | 32610.4 |
| nfed family protein | BJD13_RS15465 | Not Available | Positive | 3073964 - 3074359 | 14046.6 |
| 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase | BJD13_RS15470 | Not Available | Positive | 3074356 - 3074847 | 18139.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
