Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf1852 domain-containing protein | BJD13_RS15270 | Not Available | Negative | 3028397 - 3029380 | 37515.1 |
| fmn reductase | BJD13_RS15275 | Not Available | Negative | 3029522 - 3030109 | 21244.7 |
| lysr family transcriptional regulator | BJD13_RS15280 | Not Available | Positive | 3030298 - 3031212 | 33978.5 |
| epoxyqueuosine reductase queh | BJD13_RS15285 | Not Available | Positive | 3031212 - 3031877 | 25817.6 |
| methylenetetrahydrofolate reductase | BJD13_RS15290 | Not Available | Positive | 3031985 - 3032884 | 31918.3 |
| choice-of-anchor x domain-containing protein | BJD13_RS15295 | Not Available | Positive | 3033300 - 3035261 | 68921.5 |
| efflux transporter outer membrane subunit | BJD13_RS15300 | Not Available | Negative | 3035497 - 3036945 | 51114.4 |
| efflux rnd transporter permease subunit | BJD13_RS15305 | Not Available | Negative | 3036945 - 3040094 | 111086.0 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS15310 | Not Available | Negative | 3040104 - 3041327 | 42511.7 |
| sensor histidine kinase efflux regulator baes | BJD13_RS15315 | Not Available | Positive | 3041488 - 3042867 | 50123.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
