Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| efflux transporter outer membrane subunit | BJD13_RS02600 | Not Available | Positive | 212072 - 213541 | 52888.4 |
| mipa/ompv family protein | BJD13_RS02605 | Not Available | Positive | 213561 - 214397 | 29938.2 |
| efflux rnd transporter periplasmic adaptor subunit | BJD13_RS02610 | Not Available | Positive | 214420 - 215526 | 38285.1 |
| efflux rnd transporter permease subunit | BJD13_RS02615 | Not Available | Positive | 215523 - 218582 | 109206.0 |
| plasmid pria4b orf-3 family protein | BJD13_RS02625 | Not Available | Positive | 218787 - 219386 | 21543.9 |
| abc transporter atp-binding protein | BJD13_RS02630 | Not Available | Positive | 219555 - 221387 | 67387.3 |
| duf885 domain-containing protein | BJD13_RS02635 | Not Available | Negative | 221661 - 223466 | 66961.7 |
| gfa family protein | BJD13_RS02640 | Not Available | Positive | 223808 - 224206 | 14407.2 |
| duf4349 domain-containing protein | BJD13_RS02645 | Not Available | Positive | 224203 - 225006 | 28828.6 |
| hypothetical protein | BJD13_RS02650 | Not Available | Negative | 225203 - 225496 | 10586.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
