Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycoside hydrolase family 5 protein | BJD13_RS15145 | Not Available | Negative | 3009715 - 3011076 | 48947.5 |
| dihydroxy-acid dehydratase | BJD13_RS15150 | Not Available | Positive | 3011460 - 3013298 | 65117.9 |
| integron integrase | BJD13_RS15155 | Not Available | Negative | 3013573 - 3014550 | 36375.5 |
| hypothetical protein | BJD13_RS25035 | Not Available | Positive | 3014832 - 3015248 | 15381.8 |
| hypothetical protein | BJD13_RS15165 | Not Available | Positive | 3015306 - 3015590 | 10040.7 |
| is3-like element isxca2 family transposase | BJD13_RS15170 | Not Available | Negative | 3015650 - 3016758 | 43192.7 |
| hypothetical protein | BJD13_RS15180 | Not Available | Positive | 3016855 - 3017268 | 15956.6 |
| srpbcc family protein | BJD13_RS15190 | Not Available | Positive | 3017700 - 3018131 | 16464.5 |
| hypothetical protein | BJD13_RS15205 | Not Available | Positive | 3018868 - 3019284 | 15107.8 |
| hypothetical protein | BJD13_RS15210 | Not Available | Positive | 3019315 - 3019659 | 12793.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
