Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| coa-transferase subunit beta | BJD13_RS15045 | Not Available | Negative | 2988124 - 2988912 | 27280.5 |
| coa transferase subunit a | BJD13_RS15050 | Not Available | Negative | 2988909 - 2989772 | 31235.3 |
| aromatic ring-hydroxylating dioxygenase subunit alpha | BJD13_RS15055 | Not Available | Positive | 2990024 - 2991100 | 40247.6 |
| nfed family protein | BJD13_RS15060 | Not Available | Positive | 2991201 - 2992183 | 35374.2 |
| deor/glpr family dna-binding transcription regulator | BJD13_RS15065 | Not Available | Positive | 2992525 - 2993352 | 30211.2 |
| glycerol-3-phosphate dehydrogenase | BJD13_RS15070 | Not Available | Positive | 2993576 - 2995090 | 56098.8 |
| mip/aquaporin family protein | BJD13_RS15075 | Not Available | Positive | 2995265 - 2996086 | 29282.9 |
| glycerol kinase glpk | BJD13_RS15080 | Not Available | Positive | 2996226 - 2997725 | 54821.2 |
| nuclear transport factor 2 family protein | BJD13_RS15085 | Not Available | Negative | 2997841 - 2998353 | 19088.2 |
| 4-hydroxybenzoate 3-monooxygenase | BJD13_RS15090 | Not Available | Negative | 2998794 - 2999978 | 43412.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
