Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| pa4780 family rio1-like protein kinase | BJD13_RS14995 | Not Available | Negative | 2979259 - 2980119 | 31641.6 |
| iclr family transcriptional regulator c-terminal domain-containing protein | BJD13_RS15000 | Not Available | Positive | 2980268 - 2981128 | 30616.4 |
| Ncrna_class:other | Not Available | Not Available | Positive | 2981353 - 2981427 | Not Available |
| alpha/beta hydrolase | BJD13_RS15010 | Not Available | Negative | 2981488 - 2982414 | 32780.0 |
| 4-carboxymuconolactone decarboxylase | BJD13_RS15015 | Not Available | Negative | 2982595 - 2983008 | 15206.1 |
| 3-oxoadipate enol-lactonase | BJD13_RS15020 | Not Available | Negative | 2983035 - 2983817 | 28437.8 |
| 3-carboxy-cis,cis-muconate cycloisomerase | BJD13_RS15025 | Not Available | Negative | 2983828 - 2985180 | 46992.8 |
| protocatechuate 3,4-dioxygenase subunit alpha | BJD13_RS15030 | Not Available | Negative | 2985538 - 2986101 | 20110.8 |
| protocatechuate 3,4-dioxygenase subunit beta | BJD13_RS15035 | Not Available | Negative | 2986106 - 2986840 | 27252.0 |
| 3-oxoadipyl-coa thiolase | BJD13_RS15040 | Not Available | Negative | 2986919 - 2988127 | 41606.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
