Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| sdr family oxidoreductase | BJD13_RS14940 | Not Available | Positive | 2968732 - 2969514 | 26762.0 |
| malonyl-acp o-methyltransferase bioc | BJD13_RS14945 | Not Available | Positive | 2969578 - 2970462 | 32017.5 |
| lipid a hydroxylase lpxo | BJD13_RS14950 | Not Available | Positive | 2970712 - 2971617 | 34751.2 |
| nuclear transport factor 2 family protein | BJD13_RS14955 | Not Available | Negative | 2971719 - 2972138 | 15685.2 |
| ydcf family protein | BJD13_RS14960 | Not Available | Negative | 2972182 - 2972799 | 23119.0 |
| pyridoxal-phosphate dependent enzyme | BJD13_RS14965 | Not Available | Negative | 2972784 - 2973743 | 32440.1 |
| hypothetical protein | BJD13_RS14970 | Not Available | Positive | 2973901 - 2974341 | 16252.1 |
| trna uridine-5-carboxymethylaminomethyl(34) synthesis enzyme mnmg | BJD13_RS14980 | Not Available | Positive | 2974914 - 2976818 | 68983.2 |
| duf2490 domain-containing protein | BJD13_RS14985 | Not Available | Positive | 2977057 - 2977737 | 26661.5 |
| alpha/beta hydrolase | BJD13_RS14990 | Not Available | Negative | 2978036 - 2979004 | 34058.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
