Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hrpf/nolx family t3ss translocon protein | BJD13_RS14890 | Not Available | Positive | 2957011 - 2959431 | 86364.7 |
| type iii secretion system effector xopae | BJD13_RS14895 | Not Available | Positive | 2960474 - 2961925 | 53799.8 |
| hypothetical protein | BJD13_RS25030 | Not Available | Positive | 2961973 - 2962161 | 6199.53 |
| Trna-arg | Not Available | Not Available | Positive | 2962326 - 2962402 | Not Available |
| 4-hydroxybenzoate octaprenyltransferase | BJD13_RS14910 | Not Available | Positive | 2962879 - 2963784 | 33447.2 |
| comf family protein | BJD13_RS14915 | Not Available | Negative | 2964152 - 2964877 | 26693.7 |
| biotin synthase biob | BJD13_RS14920 | Not Available | Positive | 2964927 - 2965961 | 37751.4 |
| 8-amino-7-oxononanoate synthase | BJD13_RS14925 | Not Available | Positive | 2965885 - 2967258 | 48945.1 |
| hypothetical protein | BJD13_RS14930 | Not Available | Positive | 2967450 - 2967824 | 13947.7 |
| pimeloyl-acp methyl ester esterase bioh | BJD13_RS14935 | Not Available | Positive | 2967925 - 2968686 | 27050.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
