Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion system cytoplasmic ring protein sctq | BJD13_RS14845 | Not Available | Positive | 2948299 - 2949252 | 33294.3 |
| type iii secretion system export apparatus subunit sctr | BJD13_RS14850 | Not Available | Positive | 2949239 - 2949883 | 23491.7 |
| type iii secretion system export apparatus subunit scts | BJD13_RS14855 | Not Available | Positive | 2949888 - 2950148 | 8914.22 |
| hypothetical protein | BJD13_RS14860 | Not Available | Positive | 2950145 - 2950972 | 30400.1 |
| hrpd5 family protein | BJD13_RS14865 | Not Available | Positive | 2950969 - 2951907 | 33601.8 |
| hrpd6 family protein | BJD13_RS14870 | Not Available | Positive | 2951919 - 2952161 | 8779.42 |
| hrpe family protein | BJD13_RS24715 | Not Available | Positive | 2952242 - 2952523 | 9745.56 |
| cest family type iii secretion system chaperone | BJD13_RS14875 | Not Available | Positive | 2952578 - 2953048 | 17776.2 |
| type iii secretion system effector xopf1 | BJD13_RS24260 | Not Available | Negative | 2953668 - 2955686 | 70577.5 |
| hpa3 family type iii secretion system protein | BJD13_RS14885 | Not Available | Negative | 2955683 - 2956138 | 16172.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
