Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type iii secretion protein hrpb7 | BJD13_RS14795 | Not Available | Negative | 2939562 - 2940071 | 18825.1 |
| type iii secretion system atpase sctn | BJD13_RS14800 | Not Available | Negative | 2940064 - 2941392 | 47712.8 |
| type iii secretion system stator protein sctl | BJD13_RS14805 | Not Available | Negative | 2941382 - 2942083 | 25219.6 |
| type iii secretion protein hrpb4 | BJD13_RS14810 | Not Available | Negative | 2942068 - 2942697 | 22417.1 |
| type iii secretion system inner membrane ring lipoprotein sctj | BJD13_RS14815 | Not Available | Negative | 2942705 - 2943466 | 27264.7 |
| type iii secretion protein hrpb2 | BJD13_RS14820 | Not Available | Negative | 2943468 - 2943860 | 13741.8 |
| hrpb1 family type iii secretion system apparatus protein | BJD13_RS14825 | Not Available | Negative | 2943894 - 2944349 | 16023.2 |
| type iii secretion system export apparatus subunit sctu | BJD13_RS14830 | Not Available | Positive | 2944564 - 2945637 | 38918.8 |
| fhipep family type iii secretion protein | BJD13_RS14835 | Not Available | Positive | 2945631 - 2947568 | 69892.2 |
| type iii secretion system protein sctp | BJD13_RS14840 | Not Available | Positive | 2947568 - 2948206 | 23480.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
