Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| duf3772 domain-containing protein | BJD13_RS14730 | Not Available | Negative | 2923869 - 2926259 | 85372.1 |
| hpf/raia family ribosome-associated protein | BJD13_RS14735 | Not Available | Positive | 2926612 - 2926953 | 11973.1 |
| hypothetical protein | BJD13_RS24710 | Not Available | Positive | 2928377 - 2929936 | 54926.3 |
| lytic transglycosylase domain-containing protein | BJD13_RS14750 | Not Available | Negative | 2930400 - 2930963 | 21053.0 |
| xopa/hpa1 family type iii secretion system protein | BJD13_RS14755 | Not Available | Positive | 2931332 - 2931685 | 12805.0 |
| nfed family protein | BJD13_RS14760 | Not Available | Negative | 2931739 - 2932854 | 40015.2 |
| ulp1 family isopeptidase | BJD13_RS25155 | Not Available | Negative | 2932994 - 2935216 | 82707.6 |
| is1595 family transposase | BJD13_RS14780 | Not Available | Positive | 2935640 - 2936605 | 36146.8 |
| type iii secretion system outer membrane ring subunit sctc | BJD13_RS14785 | Not Available | Negative | 2936830 - 2938653 | 63938.6 |
| type iii secretion system export apparatus subunit sctt | BJD13_RS14790 | Not Available | Negative | 2938735 - 2939565 | 28942.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
