Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative bifunctional diguanylate cyclase/phosphodiesterase | BJD13_RS02545 | Not Available | Positive | 199037 - 201442 | 88231.7 |
| pseudouridine synthase | BJD13_RS02550 | Not Available | Positive | 201583 - 202305 | 27010.0 |
| sensor domain-containing diguanylate cyclase | BJD13_RS02555 | Not Available | Positive | 202503 - 203630 | 40963.8 |
| dmt family transporter | BJD13_RS02560 | Not Available | Negative | 203795 - 204742 | 33540.6 |
| duf72 domain-containing protein | BJD13_RS02565 | Not Available | Negative | 205119 - 205961 | 30950.8 |
| ribonuclease e activity regulator rraa | BJD13_RS02575 | Not Available | Positive | 206494 - 206994 | 17555.1 |
| serine hydrolase | BJD13_RS02580 | Not Available | Positive | 206936 - 208612 | 61954.6 |
| cation:proton antiporter | BJD13_RS02585 | Not Available | Positive | 208758 - 210023 | 44854.6 |
| sensor histidine kinase | BJD13_RS02590 | Not Available | Negative | 210087 - 211280 | 44388.9 |
| response regulator | BJD13_RS02595 | Not Available | Negative | 211277 - 211966 | 25001.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
