Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| peptide mfs transporter | BJD13_RS14555 | Not Available | Negative | 2876279 - 2877799 | 54599.1 |
| tryptophan 2,3-dioxygenase | BJD13_RS14560 | Not Available | Negative | 2878049 - 2878945 | 34504.1 |
| lamin tail domain-containing protein | BJD13_RS14565 | Not Available | Positive | 2879393 - 2882974 | 122072.0 |
| pyruvate dehydrogenase (acetyl-transferring) e1 component subunit alpha | BJD13_RS14570 | Not Available | Positive | 2883152 - 2884240 | 39546.8 |
| alpha-ketoacid dehydrogenase subunit beta | BJD13_RS14575 | Not Available | Positive | 2884233 - 2885303 | 38360.1 |
| sh3 domain-containing protein | BJD13_RS14580 | Not Available | Positive | 2885305 - 2885688 | 14183.3 |
| dihydrolipoamide acetyltransferase family protein | BJD13_RS14585 | Not Available | Positive | 2885685 - 2887193 | 51807.0 |
| nfed family protein | BJD13_RS14590 | Not Available | Negative | 2887196 - 2887827 | 23068.2 |
| dead/deah box helicase | BJD13_RS14600 | Not Available | Positive | 2889388 - 2890680 | 45603.7 |
| duf6172 family protein | BJD13_RS25025 | Not Available | Negative | 2891116 - 2891451 | 12852.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
