Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gln | Not Available | Not Available | Positive | 2839266 - 2839340 | Not Available |
| 30s ribosomal protein s9 | BJD13_RS14360 | Not Available | Negative | 2839564 - 2839956 | 14523.5 |
| 50s ribosomal protein l13 | BJD13_RS14365 | Not Available | Negative | 2839959 - 2840387 | 16081.6 |
| 2-polyprenyl-3-methyl-6-methoxy-1,4- benzoquinone monooxygenase | BJD13_RS14370 | Not Available | Positive | 2840570 - 2841223 | 24016.4 |
| dmt family transporter | BJD13_RS14375 | Not Available | Negative | 2841533 - 2841847 | 10888.8 |
| adenosylmethionine decarboxylase | BJD13_RS14380 | Not Available | Negative | 2842010 - 2842804 | 30807.8 |
| camp-activated global transcriptional regulator crp | BJD13_RS14385 | Not Available | Positive | 2842942 - 2843634 | 25622.8 |
| haloacid dehalogenase-like hydrolase | BJD13_RS14390 | Not Available | Negative | 2843955 - 2844671 | 26430.4 |
| indole-3-glycerol phosphate synthase trpc | BJD13_RS14395 | Not Available | Negative | 2844664 - 2845461 | 28768.6 |
| anthranilate phosphoribosyltransferase | BJD13_RS14400 | Not Available | Negative | 2845602 - 2846639 | 36562.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
