Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| iron-sulfur cluster insertion protein erpa | BJD13_RS14305 | Not Available | Negative | 2830220 - 2830606 | 13634.0 |
| bactofilin family protein | BJD13_RS14310 | Not Available | Negative | 2830690 - 2831139 | 15156.0 |
| duf6776 family protein | BJD13_RS14315 | Not Available | Negative | 2831143 - 2831880 | 26951.1 |
| duf4126 domain-containing protein | BJD13_RS14320 | Not Available | Positive | 2832021 - 2832647 | 21520.4 |
| eal domain-containing protein | BJD13_RS14325 | Not Available | Positive | 2832686 - 2834662 | 70736.2 |
| atp-binding protein | BJD13_RS14330 | Not Available | Positive | 2834702 - 2836972 | 82126.1 |
| bacterioferritin | BJD13_RS14335 | Not Available | Negative | 2837336 - 2837806 | 18215.9 |
| bacterioferritin-associated ferredoxin | BJD13_RS14340 | Not Available | Negative | 2838111 - 2838320 | 7080.56 |
| rna pyrophosphohydrolase | BJD13_RS14345 | Not Available | Negative | 2838401 - 2839018 | 23605.3 |
| Trna-met | Not Available | Not Available | Positive | 2839137 - 2839213 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
