Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| acetyl-coa carboxylase biotin carboxyl carrier protein | BJD13_RS14140 | Not Available | Positive | 2797076 - 2797564 | 17025.7 |
| four helix bundle protein | BJD13_RS14145 | Not Available | Positive | 2797641 - 2797970 | 12198.5 |
| acetyl-coa carboxylase biotin carboxylase subunit | BJD13_RS14150 | Not Available | Positive | 2798013 - 2799380 | 49426.8 |
| hypothetical protein | BJD13_RS14155 | Not Available | Negative | 2799531 - 2799896 | 13009.4 |
| hypothetical protein | BJD13_RS14160 | Not Available | Negative | 2799893 - 2800822 | 32514.3 |
| 50s ribosomal protein l11 methyltransferase | BJD13_RS14170 | Not Available | Positive | 2801715 - 2802635 | 33029.2 |
| hypothetical protein | BJD13_RS14175 | Not Available | Negative | 2802658 - 2803167 | 18577.5 |
| helix-turn-helix domain-containing protein | BJD13_RS14180 | Not Available | Positive | 2803311 - 2803688 | 14002.9 |
| duf3426 domain-containing protein | BJD13_RS25435 | Not Available | Positive | 2804015 - 2805385 | 45973.8 |
| dna-binding transcriptional regulator fis | BJD13_RS14195 | Not Available | Positive | 2805491 - 2805763 | 10133.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
