Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| alka n-terminal domain-containing protein | BJD13_RS02490 | Not Available | Negative | 190438 - 191901 | 52559.5 |
| hypothetical protein | BJD13_RS02495 | Not Available | Positive | 192049 - 193275 | 43036.5 |
| hypothetical protein | BJD13_RS02500 | Not Available | Positive | 193352 - 193606 | 8975.24 |
| duf4019 domain-containing protein | BJD13_RS02505 | Not Available | Positive | 193947 - 194483 | 18771.7 |
| mapeg family protein | BJD13_RS02510 | Not Available | Positive | 194509 - 194910 | 14410.9 |
| hypothetical protein | BJD13_RS02520 | Not Available | Negative | 194937 - 195257 | 11621.6 |
| rna-binding s4 domain-containing protein | BJD13_RS02525 | Not Available | Negative | 195254 - 195496 | 8610.2 |
| hypothetical protein | BJD13_RS02530 | Not Available | Negative | 195533 - 196180 | 23979.1 |
| sigma-70 family rna polymerase sigma factor | BJD13_RS02535 | Not Available | Negative | 196210 - 196728 | 19342.3 |
| dead/deah box helicase | BJD13_RS02540 | Not Available | Positive | 196877 - 198775 | 69170.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
