Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tonb-dependent receptor plug domain-containing protein | BJD13_RS14090 | Not Available | Negative | 2782784 - 2785597 | 103237.0 |
| xopx family type iii secretion system effector | BJD13_RS14095 | Not Available | Positive | 2786099 - 2788192 | 73858.7 |
| chaperonin groel | BJD13_RS14100 | Not Available | Negative | 2788306 - 2789946 | 57201.8 |
| co-chaperone groes | BJD13_RS14105 | Not Available | Negative | 2790082 - 2790369 | 9980.03 |
| Ncrna_class:other | Not Available | Not Available | Positive | 2790567 - 2790636 | Not Available |
| endonuclease | BJD13_RS14115 | Not Available | Positive | 2790777 - 2792567 | 61210.2 |
| Ncrna_class:other | Not Available | Not Available | Positive | 2792572 - 2792646 | Not Available |
| divalent-cation tolerance protein cuta | BJD13_RS14125 | Not Available | Positive | 2793032 - 2793364 | 12160.6 |
| protein-disulfide reductase dsbd family protein | BJD13_RS14130 | Not Available | Positive | 2793370 - 2795688 | 81511.6 |
| type ii 3-dehydroquinate dehydratase | BJD13_RS14135 | Not Available | Positive | 2796533 - 2796979 | 16109.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
