Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| biotin-independent malonate decarboxylase subunit beta | BJD13_RS13990 | Not Available | Negative | 2756513 - 2757415 | 31780.1 |
| malonate decarboxylase acyl carrier protein | BJD13_RS13995 | Not Available | Negative | 2757537 - 2757854 | 11291.6 |
| malonate decarboxylase subunit alpha | BJD13_RS14000 | Not Available | Negative | 2757864 - 2759510 | 60284.4 |
| padr family transcriptional regulator | BJD13_RS14005 | Not Available | Positive | 2759697 - 2760233 | 19556.4 |
| siderophore-interacting protein | BJD13_RS14010 | Not Available | Positive | 2760544 - 2761338 | 29457.4 |
| histidine-type phosphatase | BJD13_RS14015 | Not Available | Negative | 2761421 - 2762692 | 44262.7 |
| nfed family protein | BJD13_RS25020 | Not Available | Negative | 2762877 - 2763116 | 8767.46 |
| ycei family protein | BJD13_RS14020 | Not Available | Negative | 2763244 - 2763987 | 25148.5 |
| malonic semialdehyde reductase | BJD13_RS14025 | Not Available | Negative | 2764219 - 2764809 | 21061.8 |
| mitochondrial fission elm1 family protein | BJD13_RS14030 | Not Available | Positive | 2764944 - 2765891 | 33583.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
