Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| spoiie family protein phosphatase | BJD13_RS13940 | Not Available | Positive | 2746975 - 2749083 | 76880.6 |
| atp-binding protein | BJD13_RS13945 | Not Available | Positive | 2749080 - 2749511 | 15387.5 |
| stas domain-containing protein | BJD13_RS13950 | Not Available | Positive | 2749508 - 2749927 | 15295.5 |
| had hydrolase-like protein | BJD13_RS13955 | Not Available | Positive | 2750149 - 2750772 | 22049.4 |
| gntr family transcriptional regulator | BJD13_RS13960 | Not Available | Negative | 2750920 - 2751639 | 26456.0 |
| slc13 family permease | BJD13_RS13965 | Not Available | Negative | 2751718 - 2753073 | 46444.3 |
| malonate decarboxylase subunit epsilon | BJD13_RS13970 | Not Available | Negative | 2753161 - 2754081 | 31392.1 |
| triphosphoribosyl-dephospho-coa synthase mdcb | BJD13_RS13975 | Not Available | Negative | 2754308 - 2755177 | 30776.0 |
| malonate decarboxylase holo-[acyl-carrier-protein] synthase | BJD13_RS13980 | Not Available | Negative | 2755174 - 2755815 | 23084.7 |
| biotin-independent malonate decarboxylase subunit gamma | BJD13_RS13985 | Not Available | Negative | 2755818 - 2756522 | 24632.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
