Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS13890 | Not Available | Positive | 2735813 - 2736010 | 7394.78 |
| transposase | BJD13_RS13895 | Not Available | Positive | 2736178 - 2736618 | 16658.1 |
| sir2 family protein | BJD13_RS25245 | Not Available | Negative | 2737070 - 2737882 | 30522.6 |
| hypothetical protein | BJD13_RS25250 | Not Available | Negative | 2737879 - 2738472 | 22432.7 |
| sce7725 family protein | BJD13_RS24705 | Not Available | Negative | 2738537 - 2739469 | 33877.1 |
| sce7726 family protein | BJD13_RS13910 | Not Available | Negative | 2739488 - 2740237 | 28185.4 |
| pyruvate dehydrogenase (acetyl-transferring), homodimeric type | BJD13_RS13920 | Not Available | Negative | 2740416 - 2743103 | 99609.5 |
| nfed family protein | BJD13_RS13925 | Not Available | Negative | 2743506 - 2744505 | 36827.7 |
| xvipcd domain-containing protein | BJD13_RS13930 | Not Available | Negative | 2744916 - 2746241 | 47224.1 |
| hypothetical protein | BJD13_RS13935 | Not Available | Negative | 2746238 - 2746837 | 21523.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
