Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| is3-like element isxca2 family transposase | BJD13_RS13820 | Not Available | Positive | 2726093 - 2727201 | 43192.7 |
| nfed family protein | BJD13_RS25635 | Not Available | Negative | 2727220 - 2727489 | 9255.29 |
| hypothetical protein | BJD13_RS13830 | Not Available | Positive | 2727775 - 2728473 | 25258.4 |
| hypothetical protein | BJD13_RS13835 | Not Available | Positive | 2728604 - 2729020 | 14472.3 |
| xvipcd domain-containing protein | BJD13_RS24235 | Not Available | Positive | 2729024 - 2730211 | 42786.5 |
| hypothetical protein | BJD13_RS13845 | Not Available | Positive | 2730368 - 2730760 | 14315.5 |
| transposase | BJD13_RS13855 | Not Available | Positive | 2731508 - 2732206 | 26372.9 |
| trypsin-like serine protease | BJD13_RS13865 | Not Available | Negative | 2732686 - 2733639 | 34027.1 |
| transposase | BJD13_RS13870 | Not Available | Positive | 2734030 - 2734407 | 14175.8 |
| hypothetical protein | BJD13_RS13875 | Not Available | Positive | 2734437 - 2735117 | 24688.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
