Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS13780 | Not Available | Positive | 2719770 - 2720114 | 12920.5 |
| hypothetical protein | BJD13_RS13785 | Not Available | Negative | 2720173 - 2720586 | 15017.0 |
| dj-1/pfpi family protein | BJD13_RS13790 | Not Available | Negative | 2720751 - 2721293 | 18596.3 |
| nfed family protein | BJD13_RS25415 | Not Available | Negative | 2721300 - 2721518 | 7783.43 |
| nfed family protein | BJD13_RS25575 | Not Available | Negative | 2721794 - 2721886 | 3347.06 |
| nfed family protein | BJD13_RS25005 | Not Available | Positive | 2721885 - 2722043 | 5368.24 |
| xopaf/avrxv3 family type iii secretion system effector | BJD13_RS25420 | Not Available | Negative | 2722528 - 2723184 | 23134.2 |
| nfed family protein | BJD13_RS25425 | Not Available | Negative | 2723831 - 2724037 | 7624.88 |
| nfed family protein | BJD13_RS25430 | Not Available | Negative | 2724352 - 2724594 | 8553.26 |
| syme family type i addiction module toxin | BJD13_RS13810 | Not Available | Negative | 2725451 - 2725846 | 14508.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
