Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| yiix/yebb-like n1pc/p60 family cysteine hydrolase | BJD13_RS13730 | Not Available | Positive | 2709825 - 2710445 | 22877.4 |
| alpha/beta hydrolase | BJD13_RS13735 | Not Available | Positive | 2710531 - 2711469 | 34589.9 |
| membrane protein | BJD13_RS13740 | Not Available | Positive | 2711725 - 2712186 | 15439.3 |
| voc family protein | BJD13_RS13745 | Not Available | Negative | 2712319 - 2712714 | 13867.2 |
| glutathione s-transferase family protein | BJD13_RS13750 | Not Available | Negative | 2712787 - 2713761 | 36711.2 |
| spfh domain-containing protein | BJD13_RS13755 | Not Available | Negative | 2713924 - 2714703 | 28616.0 |
| sdr family nad(p)-dependent oxidoreductase | BJD13_RS13760 | Not Available | Positive | 2715064 - 2716650 | 59684.2 |
| hypothetical protein | BJD13_RS13765 | Not Available | Negative | 2716988 - 2717575 | 20403.6 |
| hypothetical protein | BJD13_RS13770 | Not Available | Negative | 2718004 - 2718315 | 11498.6 |
| nfed family protein | BJD13_RS13775 | Not Available | Positive | 2718618 - 2719727 | 40923.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
