Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS13680 | Not Available | Positive | 2698322 - 2698867 | 19572.2 |
| hypothetical protein | BJD13_RS13685 | Not Available | Negative | 2699095 - 2699289 | 7245.84 |
| nad(p)/fad-dependent oxidoreductase | BJD13_RS13690 | Not Available | Negative | 2699648 - 2700547 | 31498.8 |
| rrf2 family transcriptional regulator | BJD13_RS13695 | Not Available | Negative | 2700650 - 2701123 | 16643.1 |
| sensor domain-containing diguanylate cyclase | BJD13_RS13700 | Not Available | Negative | 2701232 - 2703106 | 67819.5 |
| duf1615 domain-containing protein | BJD13_RS13705 | Not Available | Positive | 2703609 - 2704700 | 39428.8 |
| gad-like domain-containing protein | BJD13_RS13710 | Not Available | Negative | 2704742 - 2706175 | 52840.0 |
| s9 family peptidase | BJD13_RS13715 | Not Available | Positive | 2706544 - 2708871 | 85689.1 |
| nfed family protein | BJD13_RS13720 | Not Available | Negative | 2708918 - 2709222 | 10769.9 |
| duf3817 domain-containing protein | BJD13_RS13725 | Not Available | Negative | 2709261 - 2709596 | 12453.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
