Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| nfed family protein | BJD13_RS13620 | Not Available | Positive | 2686240 - 2687011 | 27696.1 |
| alpha,alpha-trehalase trea | BJD13_RS13625 | Not Available | Positive | 2687283 - 2688956 | 62136.2 |
| aim24 family protein | BJD13_RS13635 | Not Available | Positive | 2689383 - 2690078 | 24820.1 |
| magnesium transporter cora family protein | BJD13_RS13640 | Not Available | Negative | 2690418 - 2691329 | 33718.8 |
| xopv/aopv family type iii secretion system effector | BJD13_RS13645 | Not Available | Positive | 2691567 - 2692553 | 35863.3 |
| d-serine/d-alanine/glycine transporter | BJD13_RS13650 | Not Available | Negative | 2692640 - 2694016 | 49773.2 |
| hypothetical protein | BJD13_RS13660 | Not Available | Negative | 2694787 - 2695002 | 7330.23 |
| transporter substrate-binding domain-containing protein | BJD13_RS13665 | Not Available | Positive | 2695301 - 2696074 | 28705.4 |
| dmt family transporter | BJD13_RS13670 | Not Available | Negative | 2696172 - 2697047 | 31911.6 |
| class i sam-dependent methyltransferase | BJD13_RS13675 | Not Available | Positive | 2697213 - 2698127 | 32980.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
