Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | BJD13_RS02440 | Not Available | Negative | 177445 - 178053 | 20530.0 |
| s8 family peptidase | BJD13_RS02445 | Not Available | Negative | 178055 - 179851 | 62700.3 |
| tonb-dependent receptor | BJD13_RS02450 | Not Available | Negative | 180707 - 183088 | 86501.5 |
| tonb-dependent receptor | BJD13_RS02455 | Not Available | Negative | 183481 - 185544 | 74284.6 |
| merc domain-containing protein | BJD13_RS02460 | Not Available | Positive | 185707 - 186123 | 14675.5 |
| Ncrna_class:other | Not Available | Not Available | Positive | 186185 - 186261 | Not Available |
| 30s ribosomal protein thx | BJD13_RS02470 | Not Available | Positive | 186566 - 186748 | 6051.48 |
| chloride channel protein | BJD13_RS02475 | Not Available | Negative | 187045 - 188436 | 47979.2 |
| ectonucleotide pyrophosphatase/phosphodiesterase | BJD13_RS02480 | Not Available | Negative | 188561 - 189859 | 46701.5 |
| methylated-dna--[protein]-cysteine s-methyltransferase | BJD13_RS02485 | Not Available | Negative | 189896 - 190441 | 19324.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
