Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| m28 family metallopeptidase | BJD13_RS13570 | Not Available | Negative | 2667448 - 2669097 | 59442.6 |
| ggdef domain-containing protein | BJD13_RS13575 | Not Available | Negative | 2669265 - 2670245 | 36226.6 |
| sulp family inorganic anion transporter | BJD13_RS13580 | Not Available | Negative | 2670483 - 2671970 | 51952.1 |
| cellulase family glycosylhydrolase | BJD13_RS13585 | Not Available | Positive | 2672183 - 2673619 | 51813.9 |
| methyl-accepting chemotaxis protein | BJD13_RS13590 | Not Available | Positive | 2673886 - 2676072 | 78663.5 |
| pas domain s-box protein | BJD13_RS13595 | Not Available | Negative | 2676639 - 2679215 | 93248.1 |
| m16 family metallopeptidase | BJD13_RS13600 | Not Available | Positive | 2679473 - 2682352 | 103370.0 |
| gaf domain-containing protein | BJD13_RS13605 | Not Available | Positive | 2682916 - 2683845 | 34049.6 |
| hypothetical protein | BJD13_RS13610 | Not Available | Negative | 2683883 - 2684788 | 33041.1 |
| dna-formamidopyrimidine glycosylase family protein | BJD13_RS13615 | Not Available | Negative | 2685383 - 2686135 | 28700.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
