Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| lipocalin family protein | BJD13_RS13510 | Not Available | Positive | 2657003 - 2657572 | 21806.3 |
| voc family protein | BJD13_RS13515 | Not Available | Positive | 2657605 - 2657946 | 12076.5 |
| hypothetical protein | BJD13_RS13520 | Not Available | Positive | 2658034 - 2658312 | 10573.6 |
| helix-turn-helix transcriptional regulator | BJD13_RS13525 | Not Available | Negative | 2658470 - 2659435 | 36290.8 |
| ydiy family protein | BJD13_RS13535 | Not Available | Positive | 2660006 - 2660806 | 29134.6 |
| hydroxymethylbilane synthase | BJD13_RS13540 | Not Available | Negative | 2660997 - 2661911 | 32333.1 |
| lytr/algr family response regulator transcription factor | BJD13_RS13545 | Not Available | Negative | 2661942 - 2662679 | 27510.4 |
| sensor histidine kinase | BJD13_RS13550 | Not Available | Negative | 2662710 - 2663759 | 37809.8 |
| alpha/beta hydrolase | BJD13_RS13555 | Not Available | Negative | 2663764 - 2664432 | 24159.4 |
| glucans biosynthesis glucosyltransferase mdoh | BJD13_RS13560 | Not Available | Negative | 2664583 - 2666481 | 68915.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
