Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent protease subunit hslv | BJD13_RS13460 | Not Available | Negative | 2646085 - 2646636 | 19325.2 |
| tyrosine recombinase xerc | BJD13_RS13465 | Not Available | Negative | 2646833 - 2647750 | 33649.3 |
| duf484 family protein | BJD13_RS13470 | Not Available | Negative | 2647931 - 2648602 | 24592.5 |
| diaminopimelate epimerase | BJD13_RS13475 | Not Available | Negative | 2648599 - 2649453 | 30176.8 |
| lps translocon maturation chaperone lptm | BJD13_RS13480 | Not Available | Negative | 2649443 - 2649697 | 8575.22 |
| yban family protein | BJD13_RS13485 | Not Available | Negative | 2649754 - 2650152 | 15039.8 |
| s9 family peptidase | BJD13_RS13490 | Not Available | Negative | 2650520 - 2652592 | 78002.3 |
| pyridoxal phosphate-dependent aminotransferase | BJD13_RS13495 | Not Available | Positive | 2652737 - 2653921 | 42556.6 |
| prolyl oligopeptidase family serine peptidase | BJD13_RS13500 | Not Available | Negative | 2654165 - 2656258 | 77177.4 |
| hypothetical protein | BJD13_RS13505 | Not Available | Negative | 2656326 - 2656637 | 11592.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
