Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| had family hydrolase | BJD13_RS13405 | Not Available | Negative | 2634682 - 2635335 | 23539.0 |
| hypothetical protein | BJD13_RS13415 | Not Available | Negative | 2635682 - 2636401 | 25925.8 |
| m1 family metallopeptidase | BJD13_RS13420 | Not Available | Negative | 2636599 - 2638545 | 71043.3 |
| ggdef domain-containing protein | BJD13_RS13425 | Not Available | Negative | 2638666 - 2639556 | 32765.5 |
| bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase ubie | BJD13_RS13430 | Not Available | Negative | 2639747 - 2640508 | 27981.6 |
| mfs transporter | BJD13_RS13435 | Not Available | Positive | 2640596 - 2642263 | 59913.2 |
| hlyd family secretion protein | BJD13_RS13440 | Not Available | Positive | 2642260 - 2643348 | 39167.5 |
| gnat family n-acetyltransferase | BJD13_RS13445 | Not Available | Positive | 2643462 - 2643962 | 17875.6 |
| nucleoside deaminase | BJD13_RS13450 | Not Available | Positive | 2643959 - 2644414 | 16590.6 |
| atp-dependent protease atpase subunit hslu | BJD13_RS13455 | Not Available | Negative | 2644617 - 2645984 | 50709.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
