Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| rod shape-determining protein mrec | BJD13_RS13355 | Not Available | Negative | 2619046 - 2620389 | 45534.0 |
| rod shape-determining protein | BJD13_RS13360 | Not Available | Negative | 2620562 - 2621608 | 37399.3 |
| carbohydrate kinase family protein | BJD13_RS13365 | Not Available | Positive | 2621883 - 2622815 | 34471.1 |
| sigma-54-dependent fis family transcriptional regulator | BJD13_RS13370 | Not Available | Positive | 2623072 - 2625057 | 72723.1 |
| tonb-dependent receptor | BJD13_RS13375 | Not Available | Negative | 2625142 - 2627526 | 85636.1 |
| s-(hydroxymethyl)glutathione dehydrogenase/class iii alcohol dehydrogenase | BJD13_RS13380 | Not Available | Negative | 2627538 - 2628644 | 38878.9 |
| beta-propeller fold lactonase family protein | BJD13_RS13385 | Not Available | Negative | 2628680 - 2629726 | 36555.6 |
| c-type cytochrome | BJD13_RS13390 | Not Available | Negative | 2629723 - 2630391 | 22330.9 |
| quinoprotein dehydrogenase-associated putative abc transporter substrate-binding protein | BJD13_RS13395 | Not Available | Negative | 2630418 - 2632178 | 61909.6 |
| methanol/ethanol family pqq-dependent dehydrogenase | BJD13_RS13400 | Not Available | Negative | 2632175 - 2634199 | 71742.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
