Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ybed family protein | BJD13_RS13300 | Not Available | Negative | 2606465 - 2606743 | 10260.0 |
| lipid a deacylase lpxr family protein | BJD13_RS13305 | Not Available | Positive | 2607015 - 2608076 | 39121.8 |
| d-alanyl-d-alanine carboxypeptidase family protein | BJD13_RS13310 | Not Available | Negative | 2608201 - 2609406 | 43532.9 |
| septal ring lytic transglycosylase rlpa family protein | BJD13_RS13320 | Not Available | Negative | 2609849 - 2611261 | 48152.1 |
| lytic murein transglycosylase b | BJD13_RS13325 | Not Available | Negative | 2611258 - 2612406 | 41146.0 |
| glycoside hydrolase family 28 protein | BJD13_RS13330 | Not Available | Negative | 2612764 - 2614158 | 47582.2 |
| hypothetical protein | BJD13_RS13335 | Not Available | Positive | 2614882 - 2615265 | 13304.0 |
| rod shape-determining protein roda | BJD13_RS13340 | Not Available | Negative | 2615385 - 2616503 | 40018.1 |
| penicillin-binding protein 2 | BJD13_RS13345 | Not Available | Negative | 2616500 - 2618560 | 74834.1 |
| rod shape-determining protein mred | BJD13_RS13350 | Not Available | Negative | 2618564 - 2619049 | 18030.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
