Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| dna methyltransferase | BJD13_RS13250 | Not Available | Negative | 2594453 - 2595517 | 39083.9 |
| hypothetical protein | BJD13_RS13255 | Not Available | Negative | 2595510 - 2596610 | 40902.8 |
| nicotinate phosphoribosyltransferase | BJD13_RS13260 | Not Available | Negative | 2596633 - 2598036 | 51621.1 |
| bifunctional nicotinamide-nucleotide adenylyltransferase/nudix hydroxylase | BJD13_RS13265 | Not Available | Negative | 2598159 - 2599214 | 39445.4 |
| endonuclease/exonuclease/phosphatase family protein | BJD13_RS13270 | Not Available | Positive | 2599398 - 2600261 | 32682.0 |
| lysr substrate-binding domain-containing protein | BJD13_RS13275 | Not Available | Negative | 2600351 - 2601262 | 32531.4 |
| sulfite exporter taue/safe family protein | BJD13_RS13280 | Not Available | Positive | 2601344 - 2602087 | 25883.9 |
| carboxy terminal-processing peptidase | BJD13_RS13285 | Not Available | Negative | 2602172 - 2604331 | 79312.8 |
| lipoyl synthase | BJD13_RS13290 | Not Available | Negative | 2604750 - 2605763 | 36836.1 |
| lipoyl(octanoyl) transferase lipb | BJD13_RS13295 | Not Available | Negative | 2605779 - 2606477 | 25066.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
