Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| type ii secretion system atpase gspe | BJD13_RS13150 | Not Available | Negative | 2569415 - 2570962 | 55448.2 |
| type ii secretion system secretin gspd | BJD13_RS13155 | Not Available | Negative | 2570907 - 2572985 | 72832.5 |
| type ii secretion system protein n | BJD13_RS13160 | Not Available | Negative | 2572982 - 2573800 | 27897.5 |
| tonb-dependent receptor domain-containing protein | BJD13_RS13165 | Not Available | Negative | 2573960 - 2576617 | 97564.7 |
| hypothetical protein | BJD13_RS13170 | Not Available | Negative | 2576695 - 2578167 | 49962.0 |
| 2og-fe(ii) oxygenase | BJD13_RS13175 | Not Available | Positive | 2578353 - 2579213 | 31241.3 |
| tonb-dependent receptor | BJD13_RS13180 | Not Available | Positive | 2579511 - 2581556 | 75890.8 |
| membrane protein | BJD13_RS13185 | Not Available | Negative | 2581808 - 2582227 | 15162.9 |
| class i sam-dependent methyltransferase | BJD13_RS13190 | Not Available | Negative | 2582215 - 2583468 | 45657.3 |
| pteridine reductase | BJD13_RS13195 | Not Available | Positive | 2583467 - 2584204 | 25945.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
