Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| gntr family transcriptional regulator | BJD13_RS13100 | Not Available | Negative | 2561867 - 2562589 | 26780.1 |
| type ii secretion system protein n | BJD13_RS13105 | Not Available | Negative | 2562985 - 2563695 | 25460.3 |
| type ii secretion system protein gspm | BJD13_RS13110 | Not Available | Negative | 2563701 - 2564177 | 17216.5 |
| type ii secretion system protein gspl | BJD13_RS13115 | Not Available | Negative | 2564174 - 2565262 | 38119.1 |
| type ii secretion system minor pseudopilin gspk | BJD13_RS13120 | Not Available | Negative | 2565259 - 2566248 | 35991.4 |
| type ii secretion system minor pseudopilin gspj | BJD13_RS13125 | Not Available | Negative | 2566248 - 2566850 | 21923.3 |
| type ii secretion system minor pseudopilin gspi | BJD13_RS13130 | Not Available | Negative | 2566847 - 2567227 | 13139.9 |
| gsph/fimt family pseudopilin | BJD13_RS13135 | Not Available | Negative | 2567211 - 2567675 | 16723.2 |
| type ii secretion system major pseudopilin gspg | BJD13_RS13140 | Not Available | Negative | 2567733 - 2568197 | 17176.6 |
| type ii secretion system inner membrane protein gspf | BJD13_RS13145 | Not Available | Negative | 2568226 - 2569428 | 42829.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
