Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| choline bcct transporter bett | BJD13_RS13050 | Not Available | Positive | 2547035 - 2549014 | 73048.6 |
| betaine-aldehyde dehydrogenase | BJD13_RS13055 | Not Available | Positive | 2549055 - 2550527 | 52379.5 |
| choline dehydrogenase | BJD13_RS13060 | Not Available | Positive | 2550652 - 2552322 | 61440.6 |
| multifunctional cca addition/repair protein | BJD13_RS13065 | Not Available | Positive | 2552480 - 2553712 | 45228.4 |
| Ncrna_class:other | Not Available | Not Available | Positive | 2553909 - 2553984 | Not Available |
| tonb-dependent receptor | BJD13_RS13075 | Not Available | Negative | 2554032 - 2556701 | 97216.1 |
| n-acetylglucosamine-6-phosphate deacetylase | BJD13_RS13080 | Not Available | Negative | 2557246 - 2558400 | 39567.3 |
| sis domain-containing protein | BJD13_RS13085 | Not Available | Negative | 2558403 - 2559431 | 35491.5 |
| laci family dna-binding transcriptional regulator | BJD13_RS13090 | Not Available | Negative | 2559438 - 2560505 | 38448.6 |
| sugar mfs transporter | BJD13_RS13095 | Not Available | Negative | 2560546 - 2561823 | 45086.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
