Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Gammaproteobacteria
Order
Lysobacterales
Family
Lysobacteraceae
Genus
Xanthomonas
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Lysobacterales |
| Family | Lysobacteraceae |
| Genus | Xanthomonas |
| Species | Xanthomonas perforans |
| Strain | strain LH3 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | Rod |
| Mobility | Not Available |
| Flagellar presence | Yes |
| Number of membranes | Not Available |

Image source: Wikipedia/Wikimedia
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Solanum lycopersicum, Arabidopsis thaliana |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
872906 bp
Thymine Count
873101 bp
Guanine Count
1612744 bp
Cytosine Count
1611142 bp
Genome Length
4969893 bp
Protein-coding Genes
4115 genes
Non-Coding Genes
146 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyltransferase | BJD13_RS13000 | Not Available | Negative | 2537351 - 2538451 | 40499.7 |
| response regulator | BJD13_RS13005 | Not Available | Positive | 2538589 - 2539308 | 27061.5 |
| atp-binding protein | BJD13_RS13010 | Not Available | Positive | 2539305 - 2540807 | 54890.0 |
| glutamate--cysteine ligase | BJD13_RS13015 | Not Available | Negative | 2540995 - 2542359 | 50772.3 |
| ribosome biogenesis gtp-binding protein yiha/ysxc | BJD13_RS13020 | Not Available | Negative | 2542751 - 2543374 | 23091.6 |
| c-type cytochrome | BJD13_RS13025 | Not Available | Positive | 2543518 - 2544315 | 27609.9 |
| thiol:disulfide interchange protein dsba/dsbl | BJD13_RS13030 | Not Available | Positive | 2544409 - 2545059 | 23842.9 |
| thiol:disulfide interchange protein dsba/dsbl | BJD13_RS13035 | Not Available | Positive | 2545151 - 2545966 | 28517.8 |
| endonuclease/exonuclease/phosphatase family protein | BJD13_RS13040 | Not Available | Positive | 2546016 - 2546753 | 26875.1 |
| Ncrna_class:other | Not Available | Not Available | Positive | 2546816 - 2546891 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
| Health Condition | Relation | Reference |
|---|---|---|
| Bacterial spot of tomato | Causes | PMC6946519 |
| Bacterial spot of tomato | Causes | PMC12211302 |
| Pith necrosis | Causes | PMC12847849 |
| Bacterial spot | Causes | PMC8597037 |
| Bacterial spot of tomato | Causes | PMC8597037 |
